It really depends what website you are making.
If it's a blog, like a proper blog, that you want to post in, have few pages, lots of widgets on a sidebar, lots of socialising stuff and submitting to blog directories etc, with a simple engine ETC then choose Wordpress
If you are managing a bigger website, (something official not just personal) or an E-commerce website then Joomla will work better for you.
From my experience they're both similar in SEO, both have plugins etc that help, but there's a lot of fciknug around in Joomla to make it a blog, so it all depends on your needs.
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