Teamplayer,
I believe you have two options. This can either go through to Google or you can create a page on your site with the same layout as your site - just leave the normal area you would add content on your site for the 2nd part of Google's code to show the search results there.
On the search code/form - there would be an area where you direct (url) the search results to open.
This can even be on another of your websites or sub domain etc.
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